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M. Megraw, Baev, V., Rusinov, V., Jensen, S. T., Kalantidis, K., and Hatzigeorgiou, A. G., MicroRNA promoter element discovery in Arabidopsis., RNA, vol. 12, no. 9, pp. 1612-9, 2006.
M. Megraw, Pereira, F., Jensen, S. T., Ohler, U., and Hatzigeorgiou, A. G., A transcription factor affinity-based code for mammalian transcription initiation., Genome Res, vol. 19, no. 4, pp. 644-56, 2009.
M. Megraw, Cumbie, J. S., Ivanchenko, M. G., and Filichkin, S. A., Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants., Plant Cell, vol. 28, no. 2, pp. 286-303, 2016.
M. Megraw and Hatzigeorgiou, A. G., MicroRNA promoter analysis., Methods Mol Biol, vol. 592, pp. 149-61, 2010.
M. Megraw, Mukherjee, S., and Ohler, U., Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits., Genome Biol, vol. 14, no. 8, p. R85, 2013.
M. Megraw, Sethupathy, P., Corda, B., and Hatzigeorgiou, A. G., miRGen: a database for the study of animal microRNA genomic organization and function., Nucleic Acids Res, vol. 35, no. Database issue, pp. D149-55, 2007.
T. Morton, Petricka, J., Corcoran, D. L., Li, S., Winter, C. M., Carda, A., Benfey, P. N., Ohler, U., and Megraw, M., Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures., Plant Cell, vol. 26, no. 7, pp. 2746-60, 2014.
T. Morton, Wong, W. - K., and Megraw, M., TIPR: transcription initiation pattern recognition on a genome scale., Bioinformatics, vol. 31, no. 23, pp. 3725-32, 2015.